About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61943780_61946916_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61943780 - 61946916
Intron Length:
3137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTCTTCATCT
Flanking Amino Acid:
DRSKLELPQEANLCFVDIDN
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
34.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
83.9
0.76
0.8
80.8
30.8
Minor 5ss
40.9
-1
3.4
58.3
46.6
Minor BPS
66.8
0.61
1.8
88.14
37.2

Associated Gene:

Gene:
DENND5B
Ensembl Gene ID:
ENSAPLG00000006605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006931
61925905 - 61979795
53891