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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6194831_6195469_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6194831 - 6195469
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCAAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCCTTCTCAAAA
Flanking Amino Acid:
KLEQAKTQEEKTRNSNLQDA
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
65
0.34
1
60.2
38.5
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
55.6
0.17
1.7
64.17
42.3

Associated Gene:

Gene:
OPTN
Ensembl Gene ID:
ENSAPLG00000004645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004847
6181997 - 6198603
16607