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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61949119_61958497_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61949119 - 61958497
Intron Length:
9379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCCGACTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CTCCCTCCGACT
Flanking Amino Acid:
DVLATGPTNNNRWASRSATT
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
84.6
33.2
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
75.6
0.58
0.9
68.6
36.9
Minor 5ss
47
-0.3
2.9
67.1
37.8
Minor BPS
44.8
-0.3
1.9
61.45
42.7

Associated Gene:

Gene:
DENND5B
Ensembl Gene ID:
ENSAPLG00000006605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006931
61925905 - 61979795
53891