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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6195564_6196202_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6195564 - 6196202
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
ATCTCCTAATCA
Flanking Amino Acid:
KTISEMKIKELDRVDKAVVE
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71
35.6
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
89.5
0.89
0.6
84.7
23
Minor 5ss
43.5
-0.7
2.9
56.9
47.3
Minor BPS
56.3
0.19
2
69.36
43.2

Associated Gene:

Gene:
OPTN
Ensembl Gene ID:
ENSAPLG00000004645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004847
6181997 - 6198603
16607