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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61961807_61962621_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61961807 - 61962621
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTTATT
Flanking Amino Acid:
EGLLKECRMKTKRMLVEKMG
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.2
0.57
0.9
75.7
38.1
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
63.9
0.52
1.5
80
36.6

Associated Gene:

Gene:
DENND5B
Ensembl Gene ID:
ENSAPLG00000006605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006931
61925905 - 61979795
53891