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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61963301_61964516_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61963301 - 61964516
Intron Length:
1216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCACTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTTGTATTAACT
Flanking Amino Acid:
EKQEHSAESPVAVGPERRKS
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
76.1
0.59
0.8
71
28.5
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
70.3
0.72
1.7
88.65
36.2

Associated Gene:

Gene:
DENND5B
Ensembl Gene ID:
ENSAPLG00000006605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006931
61925905 - 61979795
53891