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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6196362_6197049_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6196362 - 6197049
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTTCTCTGATCA
Flanking Amino Acid:
LETMAVLRAQMEVYCSDFHA
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
79.1
34.9
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
77.4
0.62
1
78.1
35
Minor 5ss
35.3
-1.7
3.8
55.8
48.4
Minor BPS
57.9
0.24
1.7
73.59
37.8

Associated Gene:

Gene:
OPTN
Ensembl Gene ID:
ENSAPLG00000004645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004847
6181997 - 6198603
16607