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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61964599_61969314_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61964599 - 61969314
Intron Length:
4716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATAAT
5'SS Class:
strong_major
3'SS Sequence:
CCATCCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTA
Flanking Amino Acid:
TLRVSLIQDMRHVQNMSEIK
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
82.1
30.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.9
0.54
0.9
70
34.9
Minor 5ss
42.8
-0.8
2.7
59.2
45.4
Minor BPS
59.9
0.31
1.8
75.92
35.5

Associated Gene:

Gene:
DENND5B
Ensembl Gene ID:
ENSAPLG00000006605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006931
61925905 - 61979795
53891