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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61970890_61972390_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61970890 - 61972390
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCGTTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
ACTAACTTATTT
Flanking Amino Acid:
FCFTSVFTTIVIPYRSVIIP
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.1
42.1
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
74.5
0.55
0.8
71.6
32.8
Minor 5ss
34.6
-1.7
2.8
41
45.3
Minor BPS
50.2
0.08
1.8
68.06
42.9

Associated Gene:

Gene:
DENND5B
Ensembl Gene ID:
ENSAPLG00000006605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006931
61925905 - 61979795
53891