About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6197181_6198169_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6197181 - 6198169
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAACA
5'SS Class:
major
3'SS Sequence:
TTCTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTGACT
Flanking Amino Acid:
KDQQNLEDLGRNSLAEMQNR
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.8
34.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.6
0.8
0.6
84.7
23.1
Minor 5ss
28.8
-2.4
2.8
33.8
41.1
Minor BPS
67.8
0.64
1.8
89.97
33.4

Associated Gene:

Gene:
OPTN
Ensembl Gene ID:
ENSAPLG00000004645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004847
6181997 - 6198603
16607