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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61972537_61974280_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61972537 - 61974280
Intron Length:
1744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAT
Flanking Amino Acid:
PKNLLEMTFECQNLGKLTTV
Intron Amino Acid Position:
897

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.3
0.82
0.9
84.8
35.6
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
69
0.67
1.5
84.29
36.6

Associated Gene:

Gene:
DENND5B
Ensembl Gene ID:
ENSAPLG00000006605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006931
61925905 - 61979795
53891