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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61975789_61977432_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61975789 - 61977432
Intron Length:
1644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TACCATTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TTCTTTCTACCA
Flanking Amino Acid:
SITSLTGKNTKPNAGQIQEG
Intron Amino Acid Position:
999

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
69.4
41.2
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
74.2
0.55
0.9
67.9
37
Minor 5ss
39.1
-1.2
3
57.4
40.4
Minor BPS
49.6
-0
1.9
66.77
40.3

Associated Gene:

Gene:
DENND5B
Ensembl Gene ID:
ENSAPLG00000006605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006931
61925905 - 61979795
53891