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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61977516_61977666_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61977516 - 61977666
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTCCT
5'SS Class:
major
3'SS Sequence:
CTGTTTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GTGTTCTTACAG
Flanking Amino Acid:
VKHFHKPEKERGSLTILLCG
Intron Amino Acid Position:
1027

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
68.4
42.4
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
78
0.63
0.8
72.6
32.3
Minor 5ss
35.9
-1.6
3.1
51.8
44.5
Minor BPS
50.5
-0.1
1.8
56.74
44.6

Associated Gene:

Gene:
DENND5B
Ensembl Gene ID:
ENSAPLG00000006605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006931
61925905 - 61979795
53891