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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61977794_61978563_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61977794 - 61978563
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCACTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTCTCCCCACTA
Flanking Amino Acid:
HKNVFIWDFIEKAVAYFETS
Intron Amino Acid Position:
1069

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
72.8
0.51
0.8
65.3
28.9
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
46.9
-0.2
2.1
64.05
42.7

Associated Gene:

Gene:
DENND5B
Ensembl Gene ID:
ENSAPLG00000006605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006931
61925905 - 61979795
53891