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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61978739_61979611_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61978739 - 61979611
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTACC
5'SS Class:
major
3'SS Sequence:
ACCCCCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
GCTACACTAACT
Flanking Amino Acid:
KFQILVCLGTRDHLLPQWIP
Intron Amino Acid Position:
1127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
69.9
40.9
Major BPS
77.7
0.69
1
81
30.2
Major PPT
75.5
0.57
0.8
68.6
30.9
Minor 5ss
41.5
-0.9
2.8
55.7
41.4
Minor BPS
50.2
0.08
2
71.98
44

Associated Gene:

Gene:
DENND5B
Ensembl Gene ID:
ENSAPLG00000006605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006931
61925905 - 61979795
53891