Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6198250_6198481_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6198250 - 6198481

Intron Length:

232

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACTATAA

5'SS Class:

major

3'SS Sequence:

TCTCTGCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATCAT

U12 Branch Point Sequence:

TAATCATTTATA

Flanking Amino Acid:

QEQSPRLVQRGTGSQEWPEQ

Intron Amino Acid Position:

517

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

66.9

34.7

Major BPS

80.4

0.76

80.3

31.8

Major PPT

82.6

0.73

0.8

76.5

32.1

Minor 5ss

36.3

-1.6

3.2

47.5

47.9

Minor BPS

53.4

0.1

1.9

66.81

39.4

Associated Gene:

Gene:

OPTN

Ensembl Gene ID:

ENSAPLG00000004645

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004847

6181997 - 6198603

16607