Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62009099_62010071_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62009099 - 62010071

Intron Length:

973

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTTAGTTGA

5'SS Class:

major

3'SS Sequence:

TTCTGTCTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTATTAT

U12 Branch Point Sequence:

TGATGCAGAAGT

Flanking Amino Acid:

PAGSKKNWNHVVDARAGPSL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.2

69.1

Major BPS

0.42

1.3

60.1

46.3

Major PPT

81.8

0.71

0.8

77.2

31.6

Minor 5ss

38.4

-1.3

2.7

46.7

41.8

Minor BPS

42.8

-0.4

2.3

63.76

45.6

Associated Gene:

Gene:

SINHCAF

Ensembl Gene ID:

ENSAPLG00000006692

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006942

62007092 - 62012459

5368