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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62010199_62011326_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62010199 - 62011326
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTCCTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTGCGTTTATT
Flanking Amino Acid:
SKLQKEFKRHNSDAHSTTSS
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80.6
0.69
0.8
74.8
33.6
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
48.4
-0
2.4
73.77
43.4

Associated Gene:

Gene:
SINHCAF
Ensembl Gene ID:
ENSAPLG00000006692
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006942
62007092 - 62012459
5368