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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62011478_62012296_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62011478 - 62012296
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATATAAATGATT
Flanking Amino Acid:
FSFLDLTYWKRQKVCCGIIY
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
84.8
0.78
0.8
76.9
37.3
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
44.9
-0.3
2
65.59
38.3

Associated Gene:

Gene:
SINHCAF
Ensembl Gene ID:
ENSAPLG00000006692
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006942
62007092 - 62012459
5368