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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62036830_62040458_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62036830 - 62040458
Intron Length:
3629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TAAGCATTAAAA
Flanking Amino Acid:
KGEALNQDQLEAVEKYDEVV
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.5
41.1
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
86
0.81
0.6
84.9
22.7
Minor 5ss
47.6
-0.2
2.8
61.4
44.4
Minor BPS
53.2
0.1
1.8
64.46
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007003
62029733 - 62069253
39521