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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62040546_62042498_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
62040546 - 62042498
Intron Length:
1953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTGAAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTGTGTTTAACT
Flanking Amino Acid:
QKTFSGLSQDLLKAQRKAQR
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.3
81.8
38.5
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
59.4
0.21
1.1
55.3
43.9
Minor 5ss
40.7
-1
2.8
50.8
39
Minor BPS
72.1
0.77
1.7
87.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007003
62029733 - 62069253
39521