Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6204156_6204388_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

6204156 - 6204388

Intron Length:

233

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGCATT

5'SS Class:

strong_major

3'SS Sequence:

TCCCTTCTGACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTATAT

U12 Branch Point Sequence:

TCCCTTCTGACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

82.1

37.7

Major BPS

61.5

0.29

1.3

45.5

Major PPT

74.9

0.56

0.9

71.4

33.1

Minor 5ss

45.8

-0.4

2.9

67.6

43.1

Minor BPS

47.1

-0.2

1.6

55.44

37.8

Associated Gene:

Gene:

MCM10

Ensembl Gene ID:

ENSAPLG00000004340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004478

6203697 - 6219313

15617