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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62044214_62045291_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62044214 - 62045291
Intron Length:
1078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CATTTTTTAATC
Flanking Amino Acid:
GSEKPVVGTTYKHMKDLLSK
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.2
0.79
0.8
82.4
34
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
69.7
0.6
1.2
70.36
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007003
62029733 - 62069253
39521