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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62048152_62053128_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62048152 - 62053128
Intron Length:
4977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTAGATTTAACC
Flanking Amino Acid:
PKKFDMEPKEVPKPVHQPAA
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
0.9
68.6
39.1
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
88.9
0.87
0.6
85.2
22.1
Minor 5ss
35.9
-1.6
2.8
40.5
39.9
Minor BPS
63.2
0.4
1.6
72.03
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007003
62029733 - 62069253
39521