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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62053261_62053436_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
62053261 - 62053436
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTAAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTTTTAAAA
Flanking Amino Acid:
QIQGTYNFMQESILDFDKAS
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
83.3
29.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72
0.5
1.1
76.4
35.8
Minor 5ss
63.8
0.47
2.2
75.6
33.8
Minor BPS
70
0.62
1.3
75.65
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007003
62029733 - 62069253
39521