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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62053525_62053575_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
62053525 - 62053575
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCAAACACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
ATTTTGCAAACA
Flanking Amino Acid:
PSVTPASSPVAGLAWLEPQS
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
59
0.2
1.1
49.9
42.6
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
44.6
-0.4
2.5
65.71
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007003
62029733 - 62069253
39521