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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62053592_62057387_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
62053592 - 62057387
Intron Length:
3796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGGATCAA
5'SS Class:
weak_major
3'SS Sequence:
TTCCCCTCCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTCCCTCAGG
Flanking Amino Acid:
ASSPVAGLAWLEPQSPLPTS
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.3
0.01
1.1
47.8
38.1
Major BPS
100
1.24
0.5
100
0
Major PPT
65.6
0.35
1
63.7
31.6
Minor 5ss
29
-2.4
3.2
40.3
45.9
Minor BPS
46.6
-0.4
2.4
59.58
47.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007003
62029733 - 62069253
39521