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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62057521_62060365_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62057521 - 62060365
Intron Length:
2845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
AACTATATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTGTCTTCAACT
Flanking Amino Acid:
TAAPFQAMQTVFKVNAPLPP
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
66.5
0.37
1
59.7
40.4
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
74.5
0.85
1.5
88.1
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007003
62029733 - 62069253
39521