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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6207203_6207702_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6207203 - 6207702
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTTC
5'SS Class:
major
3'SS Sequence:
TTTCCTGCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTTTCCCATTT
Flanking Amino Acid:
GIQKSKASSAETKTPPPRQV
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
66.9
39.5
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
70.7
0.47
1.1
71
33.7
Minor 5ss
40.3
-1.1
3.5
59
45.8
Minor BPS
48.6
-0
2.1
76.5
40.5

Associated Gene:

Gene:
MCM10
Ensembl Gene ID:
ENSAPLG00000004340
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004478
6203697 - 6219313
15617