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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62088245_62090402_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62088245 - 62090402
Intron Length:
2158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
GGCTTATTCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTAAATTTAAAT
Flanking Amino Acid:
DQVEFPVRQAAAIYLKNMVT
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.1
24.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
67.7
0.4
0.9
61.9
38.9
Minor 5ss
31.8
-2.1
3
37.8
47
Minor BPS
58.9
0.36
1.6
76.29
39.5

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030932
62085142 - 62124453
39312
ENSAPLT00000019674
62085142 - 62124453
39312
ENSAPLT00000018215
62085759 - 62124348
38590
ENSAPLT00000010311
62085142 - 62124453
39312