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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6208842_6209586_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6208842 - 6209586
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AAATGTTCATTC
Flanking Amino Acid:
KKVTPQSANNGRTFSIWRLN
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.7
0.6
0.9
67.3
43.1
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
41.1
-0.7
1.9
46.79
36.4

Associated Gene:

Gene:
MCM10
Ensembl Gene ID:
ENSAPLG00000004340
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004478
6203697 - 6219313
15617