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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62090560_62092767_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62090560 - 62092767
Intron Length:
2208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
TCTCCTGCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACTTTAAGG
Flanking Amino Acid:
EGIIRSPDLVRAQLTMCLRT
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
78.4
0.64
0.8
72
32.6
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
65.7
0.36
1.7
71.79
41.3

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019674
62085142 - 62124453
39312
ENSAPLT00000018215
62085759 - 62124348
38590
ENSAPLT00000030932
62085142 - 62124453
39312