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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62090560_62093377_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62090560 - 62093377
Intron Length:
2818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
GTTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAGAT
U12 Branch Point Sequence:
AGATCCTTGACC
Flanking Amino Acid:
EGIIRSPDLVRYKKAEERDP
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
64
0.35
1.2
60.7
45.9
Major PPT
86.6
0.82
0.8
80.9
31
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
74.6
0.76
1.2
74.06
36.2

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010311
62085142 - 62124453
39312