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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62092927_62093377_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62092927 - 62093377
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
GTTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAGAT
U12 Branch Point Sequence:
AGATCCTTGACC
Flanking Amino Acid:
LCLYQLVKTYEYKKAEERDP
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
68.7
39.1
Major BPS
64
0.35
1.2
60.7
45.9
Major PPT
86.6
0.82
0.8
80.9
31
Minor 5ss
40.8
-1
2.8
45.7
43.5
Minor BPS
74.6
0.76
1.2
74.06
36.2

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019674
62085142 - 62124453
39312
ENSAPLT00000018215
62085759 - 62124348
38590
ENSAPLT00000030932
62085142 - 62124453
39312
ENSAPLT00000026070
62092781 - 62124453
31673