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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62095190_62095824_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62095190 - 62095824
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACAAAC
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTGTTTTAAAG
Flanking Amino Acid:
ALHIVARLFERYGSPGNVTK
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.2
66.4
39.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77.3
0.61
1
77.9
34.4
Minor 5ss
39.8
-1.1
3
53.2
43.8
Minor BPS
62.1
0.24
1.6
67.62
40.4

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018215
62085759 - 62124348
38590
ENSAPLT00000010311
62085142 - 62124453
39312
ENSAPLT00000030932
62085142 - 62124453
39312
ENSAPLT00000026070
62092781 - 62124453
31673
ENSAPLT00000019674
62085142 - 62124453
39312