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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62095910_62098448_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62095910 - 62098448
Intron Length:
2539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
GTTATTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CTTCGTTTAAAA
Flanking Amino Acid:
LKTYAVGIQQVLLRILDQYR
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
79.9
0.67
0.8
78
36.4
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
52.3
0.07
1.9
65.66
40.9

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019674
62085142 - 62124453
39312
ENSAPLT00000018215
62085759 - 62124348
38590
ENSAPLT00000010311
62085142 - 62124453
39312
ENSAPLT00000030932
62085142 - 62124453
39312
ENSAPLT00000026070
62092781 - 62124453
31673