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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62105502_62106108_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62105502 - 62106108
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTTTCACGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATAGCCCTAAGT
Flanking Amino Acid:
MSNLGYLRARSCWVLHSFSA
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.4
35.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.7
0.78
0.8
81.7
29.2
Minor 5ss
41.8
-0.9
2.7
47.2
42.3
Minor BPS
50.1
0.08
2.1
72.03
44.5

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019674
62085142 - 62124453
39312
ENSAPLT00000018215
62085759 - 62124348
38590
ENSAPLT00000010311
62085142 - 62124453
39312
ENSAPLT00000030932
62085142 - 62124453
39312
ENSAPLT00000026070
62092781 - 62124453
31673