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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62106275_62106881_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62106275 - 62106881
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCCACCTAATT
Flanking Amino Acid:
LQMLISNQEQAKEYVKPYVR
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
35.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
100
1.12
0.4
100
0
Minor 5ss
50.9
0.03
2.4
66.9
44.7
Minor BPS
54
0.2
1.9
75.36
41.2

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019674
62085142 - 62124453
39312
ENSAPLT00000018215
62085759 - 62124348
38590
ENSAPLT00000010311
62085142 - 62124453
39312
ENSAPLT00000030932
62085142 - 62124453
39312
ENSAPLT00000026070
62092781 - 62124453
31673