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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62107043_62107456_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62107043 - 62107456
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
TIAVDMTQHLAEIFGKVLQS
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.3
32.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
30.9
-2.2
3.4
38.5
41.1
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026070
62092781 - 62124453
31673
ENSAPLT00000019674
62085142 - 62124453
39312
ENSAPLT00000018215
62085759 - 62124348
38590
ENSAPLT00000010311
62085142 - 62124453
39312
ENSAPLT00000030932
62085142 - 62124453
39312