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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62107583_62113231_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62107583 - 62113231
Intron Length:
5649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTATGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
ILTVVEDHKECIPLFVEAVL
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
70.4
0.46
1
62.4
42.8
Minor 5ss
35.1
-1.7
3.1
48.3
47.4
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019674
62085142 - 62124453
39312