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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62109484_62110089_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
62109484 - 62110089
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCTCTT
5'SS Class:
weak_major
3'SS Sequence:
TTCTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
IGLVLQKHVIEFYEEILSLA
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
74.4
41.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.1
0.86
0.7
80.5
31.5
Minor 5ss
56.3
0.21
2.5
76.3
39.1
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026070
62092781 - 62124453
31673
ENSAPLT00000018215
62085759 - 62124348
38590
ENSAPLT00000010311
62085142 - 62124453
39312
ENSAPLT00000030932
62085142 - 62124453
39312