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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62110216_62110706_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62110216 - 62110706
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGCAA
5'SS Class:
major
3'SS Sequence:
TTCTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCGCAT
U12 Branch Point Sequence:
TAGTTCGCATTT
Flanking Amino Acid:
FQQDCFEYFADMMPLLHNYV
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
60.3
39.8
Major BPS
70
0.5
1.4
79.6
35.6
Major PPT
88.7
0.87
0.6
84.5
23.3
Minor 5ss
36.2
-1.6
3.2
47.1
48.3
Minor BPS
42
-0.5
2.2
60.45
43.8

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018215
62085759 - 62124348
38590
ENSAPLT00000010311
62085142 - 62124453
39312
ENSAPLT00000030932
62085142 - 62124453
39312
ENSAPLT00000026070
62092781 - 62124453
31673