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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62113453_62121005_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62113453 - 62121005
Intron Length:
7553

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTCTAATAATT
Flanking Amino Acid:
QWMNDTDCFLGLHDRKMCII
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
1.1
91.4
26.9
Major BPS
80
0.75
1
78.6
31
Major PPT
75.8
0.58
0.9
73.5
41.9
Minor 5ss
30.9
-2.2
3.9
43.1
43.9
Minor BPS
49.4
0.04
1.8
72.4
38

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019674
62085142 - 62124453
39312
ENSAPLT00000018215
62085759 - 62124348
38590
ENSAPLT00000010311
62085142 - 62124453
39312
ENSAPLT00000030932
62085142 - 62124453
39312
ENSAPLT00000026070
62092781 - 62124453
31673