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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62122908_62123543_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62122908 - 62123543
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGCGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTCTGATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TTTCCATGCATT
Flanking Amino Acid:
EYQFFTQALLAVQSRDAAWY
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.8
42.3
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
68.2
0.41
1
64.5
36.7
Minor 5ss
46
-0.4
3.2
63.6
48.1
Minor BPS
48
-0
2.1
75.82
40.6

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019674
62085142 - 62124453
39312
ENSAPLT00000018215
62085759 - 62124348
38590
ENSAPLT00000010311
62085142 - 62124453
39312
ENSAPLT00000030932
62085142 - 62124453
39312