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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62122908_62124355_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62122908 - 62124355
Intron Length:
1448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGCGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATCT
Flanking Amino Acid:
EYQFFTQALLETKTIEQQSG
Intron Amino Acid Position:
842

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.8
42.3
Major BPS
100
1.24
0.5
100
0
Major PPT
72.7
0.51
0.9
63.5
41.9
Minor 5ss
46
-0.4
3.2
63.6
48.1
Minor BPS
65
0.55
1.9
88.58
36.2

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026070
62092781 - 62124453
31673