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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62123661_62124355_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62123661 - 62124355
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATCT
Flanking Amino Acid:
TLAEHRRNAAETKTIEQQSG
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
72.7
0.51
0.9
63.5
41.9
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
65
0.55
1.9
88.58
36.2

Associated Gene:

Gene:
IPO8
Ensembl Gene ID:
ENSAPLG00000009843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030932
62085142 - 62124453
39312
ENSAPLT00000019674
62085142 - 62124453
39312
ENSAPLT00000010311
62085142 - 62124453
39312