About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6214757_6214853_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6214757 - 6214853
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTT
Flanking Amino Acid:
RNLCKHWTKADAENKQGGTF
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
79.6
35.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.2
0.77
0.8
77.4
36.7
Minor 5ss
40.8
-1
3
58.1
46.5
Minor BPS
64.2
0.52
1.5
78.46
39

Associated Gene:

Gene:
MCM10
Ensembl Gene ID:
ENSAPLG00000004340
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004478
6203697 - 6219313
15617