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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6216351_6216655_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6216351 - 6216655
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AACTCTTTTATT
Flanking Amino Acid:
AQSQNTDASNEVDELEPAQK
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.7
40.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
87.6
0.84
0.7
81.3
36.3
Minor 5ss
37.3
-1.4
3
52.6
43.7
Minor BPS
58.7
0.36
1.6
70.85
40.9

Associated Gene:

Gene:
MCM10
Ensembl Gene ID:
ENSAPLG00000004340
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004478
6203697 - 6219313
15617