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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62265381_62282429_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62265381 - 62282429
Intron Length:
17049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ACCTTTTCCATT
Flanking Amino Acid:
VVAERVLYMPSMGYCILFVH
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
90.9
28.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
94.1
0.99
0.6
87.9
29.5
Minor 5ss
47.2
-0.3
2.7
68.8
41.8
Minor BPS
44.2
-0.3
1.8
56.89
41.1

Associated Gene:

Gene:
TMTC1
Ensembl Gene ID:
ENSAPLG00000005055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025033
62165643 - 62326173
160531
ENSAPLT00000005235
62165643 - 62326173
160531