Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6228010_6228609_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6228010 - 6228609

Intron Length:

600

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTCCCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATCAT

U12 Branch Point Sequence:

TGATGCCCAATT

Flanking Amino Acid:

GINRTSGFRKSISCHFASSE

Intron Amino Acid Position:

252

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

75.1

35.1

Major BPS

80.4

0.76

80.3

31.8

Major PPT

0.72

0.7

76.6

25.5

Minor 5ss

32.4

-2

3.2

42.3

44.8

Minor BPS

45.6

-0.2

2.2

66.93

43.5

Associated Gene:

Gene:

PHYH

Ensembl Gene ID:

ENSAPLG00000004121

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004238

6224945 - 6234255

9311